Origin & Evolution of Life

Prebiotic Gas Flow Environment Enables Isothermal Nucleic Acid Replication

By Keith Cowing
Status Report
eLife
October 9, 2024
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Prebiotic Gas Flow Environment Enables Isothermal Nucleic Acid Replication
Fluorescence resonance energy transfer measurements revealed cycles of strand separation. (a) Micrographs of 24bp DNA FRET pair in the chamber at 45°C. 1 µl sample (5 µM DNA, 10 mM TRIS pH7, 50 µM MgCl2, 3.9mM NaCl) was subjected to a 3 nl/s diluting upflow of pure water and a gas flow of 230 ml/min across. The induced vortex, shown by the simulated flow lines (left panel), overlays with regions of high FRET indicative of double-stranded DNA. The vortex flow was expected to enable replication reactions by (1+2) strand replication in the high salt region and (3) strand separation of template and replicate in the low salt region. — eLife

Nucleic acid replication is a central process at the origin of life. On early Earth, replication is challenged by the dilution of molecular building blocks and the difficulty of separating daughter from parent strands, a necessity for exponential replication.

While thermal gradient systems have been shown to address these problems, elevated temperatures lead to degradation. Also, compared to constant temperature environments, such systems are rare.

The isothermal system studied here models an abundant geological environment of the prebiotic Earth, in which water is continuously evaporated at the point of contact with the gas flows, inducing up-concentration and circular flow patterns at the gas-water interface through momentum transfer.

We show experimentally that this setting drives a 30-fold accumulation of nucleic acids and their periodic separation by a 3-fold reduction in salt and product concentration. Fluid dynamic simulations agree with observations from tracking fluorescent beads. In this isothermal system, we were able to drive exponential DNA replication with Taq polymerase.

The results provide a model for a ubiquitous non-equilibrium system to host early Darwinian molecular evolution at constant temperature.

We considered a geological scenario in which water, containing biomolecules, is evaporated by a gas flow at the scale of millimeters. In volcanic porous rock, many of such settings can be imagined. The gas flow induces convective water currents and causes it to evaporate. Dissolved nucleic acids and salts accumulate at the gas-water interface due to the interfacial currents, even if the influx from below is pure water. Through the induced vortex, nucleic acids pass through different concentrations of salt, promoting strand separation and allowing them to replicate exponentially. Our experiments replicate this environment on the microscale, subjecting a defined sample volume to a continuous influx of pure water with an airflux brushing across. — eLife

Prebiotic gas flow environment enables isothermal nucleic acid replication, eLife preprint

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