[q-bio.MN] Understanding how self-sustaining chemical reaction networks can emerge from simple molecules is an important question in chemical approaches to the origin of life. Reflexively autocatalytic and food-generated (RAF) sets provide a mathematical framework for investigating this question.
This line of research goes back to the early work of Kauffman on autocatalytic reaction networks and was subsequently developed through the probabilistic framework of Mossel and Steel.
Further contributions by Hordijk, Steel, and collaborators extended the theory to more heterogeneous forms of catalysis, including reaction-dependent probabilities or power-law distributions of catalytic activity.
We introduce a stochastic model that combines heterogeneous molecular catalytic activity with reaction-dependent molecule-reaction compatibility. By assigning random catalytic weights to molecules and incorporating compatibility through an explicit formulation of catalysis probabilities, our model provides a concrete and flexible setting that captures both sources of heterogeneity while remaining mathematically tractable. We establish novel and general criteria for RAF formation and nonformation.
We further demonstrate that classical phase-transition criteria need not remain valid in the presence of reaction-dependent catalysis. For heavy-tailed catalytic weights, we identify and rigorously quantify an additional phase transition. In models with finite-mean catalytic weights, RAF formation and nonformation are governed by a catalytic intensity parameter.
For infinite-mean weights, however, we show that RAFs may emerge with probability tending to one even when the catalytic intensity parameter tends to zero.
Jinsu Kim, Ercan Sönmez
Comments: 25 pages
Subjects: Molecular Networks (q-bio.MN); Probability (math.PR)
MSC classes: 92B05
Cite as: arXiv:2611.06033 [q-bio.MN](or arXiv:2611.06033v1 [q-bio.MN] for this version)
https://doi.org/10.48550/arXiv.2611.06033
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Submission history
From: Jinsu Kim
[v1] Wed, 4 Nov 2026 06:38:47 UTC (1,019 KB)
https://arxiv.org/abs/2611.06033
Astrobiology, Biophysics, Biochemistry, Origin of life,
