Genomics, Proteomics, Bioinformatics

Genomic and Phenotypic Characterization of Burkholderia Isolates from the Potable Water System of the International Space Station

By Keith Cowing
Press Release
November 28, 2019
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Genomic and Phenotypic Characterization of Burkholderia Isolates from the Potable Water System of the International Space Station
Pangenomics visualizations of the 19 ISS B. cepacia isolate genome assemblies (left) and identified putative plasmids (right). Each concentric circle radiating out from the center represents an isolate, identified at the top of each next to the year they were isolated. Wrapping around the circles are the generated gene clusters (GCs), where a solid mark for an isolate at a given GC indicates that particular isolate contributed a gene to that gene cluster, and the absence of a solid color indicates that isolate did not contribute a gene to that gene cluster. The very outer layer of each is a blue and yellow line. The blue line highlights core gene clusters. The yellow line highlights accessory GCs. The putative-plasmid pangenome on the right does not include singletons in the visualization.

The opportunistic pathogens Burkholderia cepacia and Burkholderia contaminans, both genomovars of the Burkholderia cepacia complex (BCC), are frequently cultured from the potable water system (PWS) of the International Space Station (ISS).

Here, we sequenced the genomes and conducted phenotypic assays to characterize these Burkholderia isolates. All recovered isolates of the two species fall within monophyletic clades based on phylogenomic trees of conserved single-copy core genes. Within species, the ISS PWS strains all demonstrate greater than 99% average nucleotide identity (ANI), suggesting that they are of a highly similar genomic lineage and both individually may have stemmed from the two founding clonal strains before diverging into two unique sub strain populations. No evidence for horizontal gene transfer between the populations was observed. Differences between the recovered isolates can be observed at the pangenomic level, particularly within putative plasmids identified within the B. cepacia group.

Phenotypically, the ISS-derived B. cepacia isolates generally exhibit a trend of lower rates and shorter duration of macrophage intracellularization compared to the selected terrestrial reference strain (though not significantly), and significantly lower rates of cellular lysis in 7 of the 19 isolates. ISS-derived B. contaminans isolates displayed no difference in rates of macrophage intracellularization compared to the selected reference, though generally increased rates lysis, with 2 of the 5 significantly increased at 12-hours post inoculation.

We additionally find that ISS-isolated B. contaminans display hemolytic activity at 37°C not demonstrated by the terrestrial control, and greater antifungal capacity in the more recently collected isolates. Thankfully, the ISS-derived isolates generally exhibit 1-4 times greater sensitivity to common antibiotics used in their clinical treatments. Thus, despite their infection potential, therapeutic treatment should still have efficacy.

Aubrie O’Rourke, Michael D Lee, William C Nierman, Chris L Dupont
This article is a preprint and has not been certified by peer review

Explorers Club Fellow, ex-NASA Space Station Payload manager/space biologist, Away Teams, Journalist, Lapsed climber, Synaesthete, Na’Vi-Jedi-Freman-Buddhist-mix, ASL, Devon Island and Everest Base Camp veteran, (he/him) 🖖🏻